IQ-TREE MPI multicore version 2.0.6 for Linux 64-bit built Aug  3 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    holy7c16508.rc.fas.harvard.edu (AVX512, FMA3, 188 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/9.3.0-fasrc01/openmpi/4.0.2-fasrc01/iqtree/2.0.6-fasrc02/bin/iqtree2-mpi -nt 32 -st AA -ninit 10 -bb 1500 -pre 12taxa -msub nuclear -s ../../matrices/Concatenated_12taxa/12taxa_concatenated.nex -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    252891 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Sun Apr 18 18:34:47 2021
Kernel:  AVX+FMA - 32 threads (32 CPU cores detected)
MPI:     1 processes

Reading alignment file ../../matrices/Concatenated_12taxa/12taxa_concatenated.nex ... Nexus format detected
Alignment has 15 sequences with 133122 columns, 71469 distinct patterns
36555 parsimony-informative, 29197 singleton sites, 67370 constant sites
                                   Gap/Ambiguity  Composition  p-value
   1  Eremobates_IZ49755                  39.49%    failed      0.00%
   2  Pseudocellus_sp_IZ140060            50.26%    failed      0.00%
   3  Mastigoproctus_giganteus_IZ29741    18.27%    failed      0.00%
   4  Ricinoides_atewa_IZ130073           23.11%    failed      1.29%
   5  Pseudocellus_pearsei_IZ16426        32.00%    failed      0.00%
   6  Cryptocellus_Bocas_IZ30913          11.05%    failed      0.00%
   7  Cryptocellus_becki_IZ136532         11.26%    failed      0.00%
   8  Limulus_polyphemus                  18.02%    failed      0.00%
   9  Damon_variegatus_IZ29740            30.08%    passed     47.11%
  10  Tridenchthonius_MCZ                 11.23%    failed      0.00%
  11  Cryptocellus_tobagoensis_IZ143922   29.80%    failed      0.00%
  12  Centruroides_sculpturatus_IZ46910   14.41%    failed      0.00%
  13  Aoraki_denticulata_IZ141172         12.89%    passed     46.65%
  14  Ricinoides_karschii_IZ130083        13.60%    failed      0.00%
  15  Liphistius_malayanus                13.29%    passed     27.67%
WARNING: 1 sequences contain more than 50% gaps/ambiguity
****  TOTAL                               21.92%  12 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000751191 for long alignment


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.209 seconds
Perform fast likelihood tree search using LG+I+G model...
Estimate model parameters (epsilon = 5.000)
Perform nearest neighbor interchange...
Estimate model parameters (epsilon = 1.000)
1. Initial log-likelihood: -1287202.198
Optimal log-likelihood: -1287201.241
Proportion of invariable sites: 0.254
Gamma shape alpha: 0.677
Parameters optimization took 1 rounds (0.527 sec)
Time for fast ML tree search: 3.334 seconds

NOTE: ModelFinder requires 2065 MB RAM!
ModelFinder will test up to 206 protein models (sample size: 133122) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  LG+G4         1288084.962  28  2576225.924  2576225.936  2576500.296
  2  LG+R2         1291497.510  29  2583053.021  2583053.034  2583337.192
  3  LG+R3         1286696.768  31  2573455.536  2573455.551  2573759.306
  4  LG+R4         1286325.419  33  2572716.837  2572716.854  2573040.205
  5  LG+R5         1286297.568  35  2572665.136  2572665.155  2573008.102
  6  LG+R6         1286255.539  37  2572585.079  2572585.100  2572947.642
  7  LG+R7         1286243.555  39  2572565.109  2572565.133  2572947.271
  8  LG+R8         1286242.382  41  2572566.765  2572566.791  2572968.525
 11  LG            1359430.091  27  2718914.182  2718914.193  2719178.755
 12  LG+F+G4       1287560.779  47  2575215.557  2575215.591  2575676.111
 13  LG+F+R2       1290906.793  48  2581909.585  2581909.620  2582379.938
 14  LG+F+R3       1286143.271  50  2572386.542  2572386.580  2572876.493
 15  LG+F+R4       1285761.212  52  2571626.424  2571626.465  2572135.973
 16  LG+F+R5       1285692.519  54  2571493.037  2571493.082  2572022.184
 17  LG+F+R6       1285674.139  56  2571460.278  2571460.326  2572009.023
WARNING: Log-likelihood -1.28569e+06 of LG+F+R7 worse than LG+F+R6 -1.28567e+06
 18  LG+F+R7       1285685.370  58  2571486.741  2571486.792  2572055.084
 22  LG+F          1358479.811  46  2717051.623  2717051.655  2717502.378
 23  WAG+G4        1293901.083  28  2587858.167  2587858.179  2588132.539
 24  WAG+R2        1296449.197  29  2592956.394  2592956.407  2593240.566
 25  WAG+R3        1292798.211  31  2585658.422  2585658.436  2585962.191
 26  WAG+R4        1292520.700  33  2585107.400  2585107.417  2585430.768
 27  WAG+R5        1292472.692  35  2585015.385  2585015.404  2585358.351
 28  WAG+R6        1292464.147  37  2585002.294  2585002.315  2585364.858
 33  WAG           1359291.772  27  2718637.543  2718637.555  2718902.117
 34  WAG+F+G4      1293525.779  47  2587145.558  2587145.592  2587606.112
 35  WAG+F+R2      1296168.594  48  2592433.189  2592433.224  2592903.542
 36  WAG+F+R3      1292378.372  50  2584856.744  2584856.782  2585346.695
 37  WAG+F+R4      1292077.815  52  2584259.631  2584259.672  2584769.180
 38  WAG+F+R5      1292034.999  54  2584177.997  2584178.042  2584707.144
 39  WAG+F+R6      1292026.414  56  2584164.828  2584164.876  2584713.573
 44  WAG+F         1359885.387  46  2719862.774  2719862.807  2720313.529
 45  JTT+G4        1290445.283  28  2580946.566  2580946.578  2581220.938
 46  JTT+R2        1293547.108  29  2587152.215  2587152.228  2587436.387
 47  JTT+R3        1289174.913  31  2578411.825  2578411.840  2578715.595
 48  JTT+R4        1288895.103  33  2577856.206  2577856.222  2578179.573
 49  JTT+R5        1288845.468  35  2577760.937  2577760.956  2578103.902
 50  JTT+R6        1288832.475  37  2577738.950  2577738.971  2578101.514
WARNING: Log-likelihood -1.28887e+06 of JTT+R7 worse than JTT+R6 -1.28883e+06
 51  JTT+R7        1288873.932  39  2577825.863  2577825.887  2578208.025
 55  JTT           1359747.008  27  2719548.015  2719548.027  2719812.589
 56  JTT+F+G4      1289600.285  47  2579294.570  2579294.604  2579755.124
 57  JTT+F+R2      1292708.610  48  2585513.221  2585513.256  2585983.574
 58  JTT+F+R3      1288304.722  50  2576709.445  2576709.483  2577199.396
 59  JTT+F+R4      1288013.553  52  2576131.106  2576131.147  2576640.655
 60  JTT+F+R5      1287969.027  54  2576046.053  2576046.098  2576575.201
 61  JTT+F+R6      1287955.601  56  2576023.201  2576023.249  2576571.946
WARNING: Log-likelihood -1.28799e+06 of JTT+F+R7 worse than JTT+F+R6 -1.28796e+06
 62  JTT+F+R7      1287992.648  58  2576101.297  2576101.348  2576669.640
 66  JTT+F         1359344.919  46  2718781.838  2718781.870  2719232.593
 67  JTTDCMut+G4   1290436.544  28  2580929.089  2580929.101  2581203.461
 68  JTTDCMut+R2   1293548.263  29  2587154.527  2587154.540  2587438.698
 69  JTTDCMut+R3   1289154.932  31  2578371.865  2578371.880  2578675.635
 70  JTTDCMut+R4   1288876.605  33  2577819.210  2577819.227  2578142.578
 71  JTTDCMut+R5   1288825.794  35  2577721.588  2577721.607  2578064.554
 72  JTTDCMut+R6   1288813.295  37  2577700.591  2577700.612  2578063.155
WARNING: Log-likelihood -1.28885e+06 of JTTDCMut+R7 worse than JTTDCMut+R6 -1.28881e+06
 73  JTTDCMut+R7   1288853.243  39  2577784.487  2577784.510  2578166.649
 77  JTTDCMut      1359632.242  27  2719318.483  2719318.495  2719583.057
 78  JTTDCMut+F+G4 1289556.165  47  2579206.330  2579206.364  2579666.884
 79  JTTDCMut+F+R2 1292683.346  48  2585462.692  2585462.728  2585933.045
 80  JTTDCMut+F+R3 1288248.311  50  2576596.623  2576596.661  2577086.574
 81  JTTDCMut+F+R4 1287956.847  52  2576017.694  2576017.736  2576527.244
 82  JTTDCMut+F+R5 1287911.149  54  2575930.299  2575930.343  2576459.446
 83  JTTDCMut+F+R6 1287898.086  56  2575908.173  2575908.221  2576456.918
WARNING: Log-likelihood -1.28793e+06 of JTTDCMut+F+R7 worse than JTTDCMut+F+R6 -1.2879e+06
 84  JTTDCMut+F+R7 1287932.901  58  2575981.802  2575981.854  2576550.146
 88  JTTDCMut+F    1359262.473  46  2718616.947  2718616.979  2719067.702
 89  DCMut+G4      1300914.114  28  2601884.228  2601884.240  2602158.600
 90  DCMut+R2      1304640.059  29  2609338.119  2609338.132  2609622.290
 91  DCMut+R3      1299476.794  31  2599015.589  2599015.604  2599319.358
 92  DCMut+R4      1298916.651  33  2597899.301  2597899.318  2598222.669
 93  DCMut+R5      1298844.398  35  2597758.796  2597758.815  2598101.762
 94  DCMut+R6      1298831.860  37  2597737.720  2597737.741  2598100.284
WARNING: Log-likelihood -1.29884e+06 of DCMut+R7 worse than DCMut+R6 -1.29883e+06
 95  DCMut+R7      1298842.445  39  2597762.889  2597762.913  2598145.051
 99  DCMut         1371707.539  27  2743469.078  2743469.089  2743733.652
100  DCMut+F+G4    1295667.754  47  2591429.509  2591429.543  2591890.063
101  DCMut+F+R2    1299469.486  48  2599034.972  2599035.007  2599505.325
102  DCMut+F+R3    1294205.548  50  2588511.095  2588511.134  2589001.046
103  DCMut+F+R4    1293620.433  52  2587344.867  2587344.908  2587854.416
104  DCMut+F+R5    1293550.732  54  2587209.465  2587209.509  2587738.612
105  DCMut+F+R6    1293538.603  56  2587189.206  2587189.254  2587737.951
WARNING: Log-likelihood -1.29355e+06 of DCMut+F+R7 worse than DCMut+F+R6 -1.29354e+06
106  DCMut+F+R7    1293547.173  58  2587210.346  2587210.397  2587778.689
110  DCMut+F       1367807.951  46  2735707.901  2735707.934  2736158.656
111  VT+G4         1295983.488  28  2592022.976  2592022.989  2592297.349
112  VT+R2         1298070.759  29  2596199.518  2596199.531  2596483.690
113  VT+R3         1295124.406  31  2590310.811  2590310.826  2590614.581
114  VT+R4         1294930.334  33  2589926.668  2589926.685  2590250.036
115  VT+R5         1294906.449  35  2589882.897  2589882.916  2590225.863
116  VT+R6         1294901.095  37  2589876.190  2589876.211  2590238.754
121  VT            1358876.903  27  2717807.805  2717807.816  2718072.379
122  VT+F+G4       1296298.590  47  2592691.179  2592691.213  2593151.733
123  VT+F+R2       1298364.965  48  2596825.929  2596825.964  2597296.282
124  VT+F+R3       1295431.425  50  2590962.850  2590962.888  2591452.801
125  VT+F+R4       1295234.422  52  2590572.843  2590572.885  2591082.392
126  VT+F+R5       1295209.451  54  2590526.902  2590526.946  2591056.049
127  VT+F+R6       1295203.983  56  2590519.965  2590520.013  2591068.711
132  VT+F          1359259.146  46  2718610.291  2718610.324  2719061.046
133  PMB+G4        1307496.204  28  2615048.407  2615048.419  2615322.780
134  PMB+R2        1309484.672  29  2619027.344  2619027.357  2619311.515
135  PMB+R3        1306731.235  31  2613524.470  2613524.485  2613828.240
136  PMB+R4        1306556.466  33  2613178.933  2613178.950  2613502.301
137  PMB+R5        1306543.692  35  2613157.384  2613157.402  2613500.349
138  PMB+R6        1306539.868  37  2613153.736  2613153.757  2613516.300
143  PMB           1369960.995  27  2739975.990  2739976.001  2740240.563
144  PMB+F+G4      1305959.216  47  2612012.432  2612012.466  2612472.986
145  PMB+F+R2      1307987.041  48  2616070.081  2616070.117  2616540.434
146  PMB+F+R3      1305113.421  50  2610326.842  2610326.881  2610816.793
147  PMB+F+R4      1304917.180  52  2609938.361  2609938.402  2610447.910
148  PMB+F+R5      1304900.716  54  2609909.433  2609909.478  2610438.580
149  PMB+F+R6      1304897.279  56  2609906.559  2609906.607  2610455.304
154  PMB+F         1368803.294  46  2737698.588  2737698.620  2738149.343
155  Blosum62+G4   1306840.096  28  2613736.191  2613736.204  2614010.564
156  Blosum62+R2   1308997.276  29  2618052.553  2618052.566  2618336.724
157  Blosum62+R3   1306039.021  31  2612140.043  2612140.058  2612443.813
158  Blosum62+R4   1305837.722  33  2611741.443  2611741.460  2612064.811
159  Blosum62+R5   1305822.043  35  2611714.086  2611714.105  2612057.052
160  Blosum62+R6   1305815.691  37  2611705.382  2611705.403  2612067.946
165  Blosum62      1369780.658  27  2739615.316  2739615.327  2739879.890
166  Blosum62+F+G4 1306407.501  47  2612909.001  2612909.035  2613369.555
167  Blosum62+F+R2 1308577.883  48  2617251.767  2617251.802  2617722.120
168  Blosum62+F+R3 1305533.832  50  2611167.663  2611167.701  2611657.614
169  Blosum62+F+R4 1305312.996  52  2610729.992  2610730.033  2611239.541
170  Blosum62+F+R5 1305292.951  54  2610693.902  2610693.947  2611223.050
171  Blosum62+F+R6 1305286.145  56  2610684.291  2610684.339  2611233.036
176  Blosum62+F    1369611.734  46  2739315.469  2739315.501  2739766.224
177  Dayhoff+G4    1300810.614  28  2601677.228  2601677.240  2601951.600
178  Dayhoff+R2    1304559.868  29  2609177.735  2609177.748  2609461.907
179  Dayhoff+R3    1299368.203  31  2598798.407  2598798.421  2599102.176
180  Dayhoff+R4    1298804.059  33  2597674.118  2597674.135  2597997.485
181  Dayhoff+R5    1298731.626  35  2597533.251  2597533.270  2597876.217
182  Dayhoff+R6    1298719.151  37  2597512.302  2597512.323  2597874.866
WARNING: Log-likelihood -1.29873e+06 of Dayhoff+R7 worse than Dayhoff+R6 -1.29872e+06
183  Dayhoff+R7    1298728.954  39  2597535.909  2597535.932  2597918.071
187  Dayhoff       1371746.493  27  2743546.985  2743546.997  2743811.559
188  Dayhoff+F+G4  1295581.240  47  2591256.480  2591256.514  2591717.034
189  Dayhoff+F+R2  1299406.168  48  2598908.336  2598908.372  2599378.689
190  Dayhoff+F+R3  1294113.981  50  2588327.962  2588328.001  2588817.914
191  Dayhoff+F+R4  1293525.071  52  2587154.142  2587154.183  2587663.691
192  Dayhoff+F+R5  1293455.281  54  2587018.561  2587018.606  2587547.708
193  Dayhoff+F+R6  1293442.914  56  2586997.828  2586997.876  2587546.574
WARNING: Log-likelihood -1.29345e+06 of Dayhoff+F+R7 worse than Dayhoff+F+R6 -1.29344e+06
194  Dayhoff+F+R7  1293451.766  58  2587019.531  2587019.583  2587587.874
198  Dayhoff+F     1367875.499  46  2735842.998  2735843.031  2736293.753
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          1295944.043  28  2591944.086  2591944.098  2592218.459
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          1291253.168  33  2582572.336  2582572.353  2582895.704
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        1294481.234  28  2589018.468  2589018.480  2589292.841
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        1288352.007  28  2576760.013  2576760.025  2577034.386
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        1287866.095  28  2575788.189  2575788.202  2576062.562
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
204  LG+C40        1287424.157  28  2574904.314  2574904.326  2575178.687
Model LG+C50 is alias for LG+POISSON+G+FMIX{C50pi1:1:0.0164297003,C50pi2:1:0.0273175755,C50pi3:1:0.0460247610,C50pi4:1:0.0084864734,C50pi5:1:0.0125389252,C50pi6:1:0.0343549036,C50pi7:1:0.0130241102,C50pi8:1:0.0094755681,C50pi9:1:0.0190040551,C50pi10:1:0.0151902354,C50pi11:1:0.0320534760,C50pi12:1:0.0210059850,C50pi13:1:0.0237408547,C50pi14:1:0.0239841203,C50pi15:1:0.0213748021,C50pi16:1:0.0210717705,C50pi17:1:0.0050241805,C50pi18:1:0.0166262276,C50pi19:1:0.0143945956,C50pi20:1:0.0104391130,C50pi21:1:0.0107628277,C50pi22:1:0.0148818171,C50pi23:1:0.0321480239,C50pi24:1:0.0145477978,C50pi25:1:0.0332355807,C50pi26:1:0.0143190281,C50pi27:1:0.0234478734,C50pi28:1:0.0183044983,C50pi29:1:0.0403269452,C50pi30:1:0.0135629530,C50pi31:1:0.0091880799,C50pi32:1:0.0158270022,C50pi33:1:0.0121019379,C50pi34:1:0.0353560982,C50pi35:1:0.0404495617,C50pi36:1:0.0104569232,C50pi37:1:0.0146187792,C50pi38:1:0.0093984095,C50pi39:1:0.0146773809,C50pi40:1:0.0201635562,C50pi41:1:0.0255640273,C50pi42:1:0.0039486842,C50pi43:1:0.0393652608,C50pi44:1:0.0056415419,C50pi45:1:0.0382833580,C50pi46:1:0.0039735086,C50pi47:1:0.0140269355,C50pi48:1:0.0476703673,C50pi49:1:0.0204062788,C50pi50:1:0.0117835304}
205  LG+C50        1286830.326  28  2573716.652  2573716.664  2573991.025
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}
206  LG+C60        1286356.516  28  2572769.031  2572769.044  2573043.404
Akaike Information Criterion:           LG+F+R6
Corrected Akaike Information Criterion: LG+F+R6
Bayesian Information Criterion:         LG+F+R6
Best-fit model: LG+F+R6 chosen according to BIC

All model information printed to 12taxa.model.gz
CPU time for ModelFinder: 224598.391 seconds (62h:23m:18s)
Wall-clock time for ModelFinder: 7173.334 seconds (1h:59m:33s)
Generating 1500 samples for ultrafast bootstrap (seed: 252891)...

NOTE: 1403 MB RAM (1 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -1285674.139
2. Current log-likelihood: -1285674.021
3. Current log-likelihood: -1285673.906
4. Current log-likelihood: -1285673.797
5. Current log-likelihood: -1285673.681
6. Current log-likelihood: -1285673.567
7. Current log-likelihood: -1285673.459
8. Current log-likelihood: -1285673.348
9. Current log-likelihood: -1285673.238
10. Current log-likelihood: -1285673.117
11. Current log-likelihood: -1285673.010
12. Current log-likelihood: -1285672.897
13. Current log-likelihood: -1285672.787
14. Current log-likelihood: -1285672.673
15. Current log-likelihood: -1285672.563
16. Current log-likelihood: -1285672.456
17. Current log-likelihood: -1285672.340
18. Current log-likelihood: -1285672.231
19. Current log-likelihood: -1285672.125
20. Current log-likelihood: -1285672.010
21. Current log-likelihood: -1285671.903
22. Current log-likelihood: -1285671.803
23. Current log-likelihood: -1285671.695
24. Current log-likelihood: -1285671.592
25. Current log-likelihood: -1285671.484
26. Current log-likelihood: -1285671.376
27. Current log-likelihood: -1285671.273
28. Current log-likelihood: -1285671.166
29. Current log-likelihood: -1285671.064
30. Current log-likelihood: -1285670.963
31. Current log-likelihood: -1285670.859
Optimal log-likelihood: -1285670.702
Site proportion and rates:  (0.313,0.014) (0.208,0.162) (0.213,0.702) (0.191,1.886) (0.068,4.779) (0.007,19.247)
Parameters optimization took 31 rounds (32.234 sec)
Computing ML distances based on estimated model parameters... 0.231 sec
Computing BIONJ tree...
0.002 seconds
Log-likelihood of BIONJ tree: -1286146.624
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 8 parsimony trees... 1.348 second
Computing log-likelihood of 8 initial trees ... 1.761 seconds
Current best score: -1285670.702

Do NNI search on 10 best initial trees
UPDATE BEST LOG-LIKELIHOOD: -1285670.702
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 2: -1285651.679
Iteration 10 / LogL: -1285653.603 / Time: 0h:1m:56s
Finish initializing candidate tree set (12)
Current best tree score: -1285651.679 / CPU time: 78.299
Number of iterations: 10
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 20 / LogL: -1285654.012 / Time: 0h:2m:34s
Iteration 30 / LogL: -1285654.220 / Time: 0h:3m:10s (0h:7m:52s left)
Iteration 40 / LogL: -1285670.217 / Time: 0h:3m:44s (0h:5m:57s left)
Iteration 50 / LogL: -1285668.099 / Time: 0h:4m:29s (0h:4m:46s left)
Log-likelihood cutoff on original alignment: -1285751.392
Iteration 60 / LogL: -1285657.942 / Time: 0h:5m:1s (0h:3m:34s left)
Iteration 70 / LogL: -1285662.921 / Time: 0h:5m:39s (0h:2m:37s left)
Iteration 80 / LogL: -1285651.767 / Time: 0h:6m:12s (0h:1m:43s left)
Iteration 90 / LogL: -1285651.862 / Time: 0h:6m:48s (0h:0m:55s left)
Iteration 100 / LogL: -1285678.321 / Time: 0h:7m:21s (0h:0m:8s left)
Log-likelihood cutoff on original alignment: -1285751.392
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 1.000
Total number of trees received: 0
Total number of trees sent: 0
Total number of NNI searches done by myself: 104
TREE SEARCH COMPLETED AFTER 103 ITERATIONS / Time: 0h:7m:32s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -1285651.679
2. Current log-likelihood: -1285651.562
3. Current log-likelihood: -1285651.384
4. Current log-likelihood: -1285651.201
5. Current log-likelihood: -1285651.030
6. Current log-likelihood: -1285650.852
7. Current log-likelihood: -1285650.684
8. Current log-likelihood: -1285650.508
9. Current log-likelihood: -1285650.341
10. Current log-likelihood: -1285650.167
11. Current log-likelihood: -1285650.011
12. Current log-likelihood: -1285649.837
13. Current log-likelihood: -1285649.683
14. Current log-likelihood: -1285649.511
15. Current log-likelihood: -1285649.358
16. Current log-likelihood: -1285649.188
17. Current log-likelihood: -1285649.041
18. Current log-likelihood: -1285648.878
19. Current log-likelihood: -1285648.732
20. Current log-likelihood: -1285648.566
21. Current log-likelihood: -1285648.421
22. Current log-likelihood: -1285648.257
23. Current log-likelihood: -1285648.113
24. Current log-likelihood: -1285647.950
25. Current log-likelihood: -1285647.808
26. Current log-likelihood: -1285647.647
27. Current log-likelihood: -1285647.507
28. Current log-likelihood: -1285647.348
29. Current log-likelihood: -1285647.209
30. Current log-likelihood: -1285647.053
31. Current log-likelihood: -1285646.921
32. Current log-likelihood: -1285646.776
33. Current log-likelihood: -1285646.640
34. Current log-likelihood: -1285646.507
35. Current log-likelihood: -1285646.357
36. Current log-likelihood: -1285646.225
37. Current log-likelihood: -1285646.081
38. Current log-likelihood: -1285645.956
39. Current log-likelihood: -1285645.814
40. Current log-likelihood: -1285645.685
41. Current log-likelihood: -1285645.559
42. Current log-likelihood: -1285645.421
43. Current log-likelihood: -1285645.295
44. Current log-likelihood: -1285645.154
45. Current log-likelihood: -1285645.036
46. Current log-likelihood: -1285644.904
47. Current log-likelihood: -1285644.782
48. Current log-likelihood: -1285644.663
49. Current log-likelihood: -1285644.531
50. Current log-likelihood: -1285644.418
51. Current log-likelihood: -1285644.291
52. Current log-likelihood: -1285644.174
53. Current log-likelihood: -1285644.059
54. Current log-likelihood: -1285643.932
55. Current log-likelihood: -1285643.823
56. Current log-likelihood: -1285643.702
57. Current log-likelihood: -1285643.589
58. Current log-likelihood: -1285643.478
59. Current log-likelihood: -1285643.356
60. Current log-likelihood: -1285643.250
61. Current log-likelihood: -1285643.146
62. Current log-likelihood: -1285643.028
63. Current log-likelihood: -1285642.921
64. Current log-likelihood: -1285642.818
65. Current log-likelihood: -1285642.706
66. Current log-likelihood: -1285642.602
67. Current log-likelihood: -1285642.504
68. Current log-likelihood: -1285642.395
69. Current log-likelihood: -1285642.293
70. Current log-likelihood: -1285642.198
71. Current log-likelihood: -1285642.091
72. Current log-likelihood: -1285641.992
73. Current log-likelihood: -1285641.899
74. Current log-likelihood: -1285641.807
75. Current log-likelihood: -1285641.716
76. Current log-likelihood: -1285641.614
77. Current log-likelihood: -1285641.520
78. Current log-likelihood: -1285641.432
79. Current log-likelihood: -1285641.332
80. Current log-likelihood: -1285641.240
81. Current log-likelihood: -1285641.154
82. Current log-likelihood: -1285641.068
83. Current log-likelihood: -1285640.983
84. Current log-likelihood: -1285640.888
85. Current log-likelihood: -1285640.801
86. Current log-likelihood: -1285640.719
87. Current log-likelihood: -1285640.634
88. Current log-likelihood: -1285640.540
89. Current log-likelihood: -1285640.459
90. Current log-likelihood: -1285640.379
91. Current log-likelihood: -1285640.299
92. Current log-likelihood: -1285640.211
93. Current log-likelihood: -1285640.129
94. Current log-likelihood: -1285640.053
95. Current log-likelihood: -1285639.989
96. Current log-likelihood: -1285639.910
97. Current log-likelihood: -1285639.825
98. Current log-likelihood: -1285639.747
99. Current log-likelihood: -1285639.674
Optimal log-likelihood: -1285639.674
Site proportion and rates:  (0.333,0.017) (0.215,0.186) (0.233,0.849) (0.162,2.198) (0.052,5.287) (0.005,23.297)
Parameters optimization took 99 rounds (127.347 sec)
BEST SCORE FOUND : -1285639.674
Creating bootstrap support values...
Split supports printed to NEXUS file 12taxa.splits.nex
Total tree length: 2.969

Total number of iterations: 103
CPU time used for tree search: 13187.520 sec (3h:39m:47s)
Wall-clock time used for tree search: 414.880 sec (0h:6m:54s)
Total CPU time used: 18332.003 sec (5h:5m:32s)
Total wall-clock time used: 580.224 sec (0h:9m:40s)

Computing bootstrap consensus tree...
Reading input file 12taxa.splits.nex...
15 taxa and 34 splits.
Consensus tree written to 12taxa.contree
Reading input trees file 12taxa.contree
Log-likelihood of consensus tree: -1285639.641

Analysis results written to: 
  IQ-TREE report:                12taxa.iqtree
  Maximum-likelihood tree:       12taxa.treefile
  Likelihood distances:          12taxa.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          12taxa.splits.nex
  Consensus tree:                12taxa.contree
  Screen log file:               12taxa.log

Date and Time: Sun Apr 18 20:44:03 2021
